Scaffold Ga0058897

Basic Information
Taxon OID	3300004139 Open in IMG/M
Scaffold ID	Ga0058897_11189883 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15739
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (65.85%)
Novel Protein Genes	20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	13 (65.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

15739

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (65.85%)

Novel Protein Genes

20 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

13 (65.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.531427	Long. (^o)	-72.189946	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.531427

Long. (^o)

-72.189946

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004601	Metagenome / Metatranscriptome	431	Y
F102999	Metagenome / Metatranscriptome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0058897_1118988310	F004601	GGAG	MLVGLRVHVNPTGETVEVRATVPVNPLTGVTVIVDVPAVPASALTLVGLAATV*
Ga0058897_1118988311	F004601	GAGG	MLVGLNVQVTPAGETVEVRATVPVNPLTGATVIVEVTAAPARALALVGLALMAKSRMLTVIVAE*
Ga0058897_1118988312	F004601	N/A	VHVNPAGDTVDVSATVPVKPLSGATVIVEVAVPPELAAMLVGLAVTVKSWMVKVTVAK*
Ga0058897_1118988313	F004601	N/A	VHVSPAGDTVDVSATVPVKPLTGATVIVEVPVAPAMAVTLVGLAATVKSTPPVTVTVIVAE*
Ga0058897_1118988315	F102999	AGG	VVPVHDSVEVCVAPRTTLVGLKVHANPAGDTVEDSVTVPVKPLSGATLIVEVAVAPARIVAVVGLAVTV*
Ga0058897_1118988316	F004601	GAG	MLVGLRVHVKPAGETADVSATVPVKPLTGATVIVDVAVAPARALTAVGLAVTVKSVTVNVTVAE*
Ga0058897_1118988317	F004601	GAG	MLVGDRVHVNPAGDTVDASATVPVNPFSGATVIVEVAVAPARALTLVGLAVTV*
Ga0058897_1118988318	F102999	N/A	VTVTVAECDSVPLVPVIVTVYVPAGPEHVRVEVWEAPRTMLPGFRAQVRPAGETTEDRATVPVNAFTGATVIVDVAVAPARALTVVGLAVTVKSLTLIVTVAE*
Ga0058897_1118988319	F004601	GGA	MLVGVRVHVNPAGDTVDVRATVPVKPFTGATVMVEVAAVPALTLTLVGLAVTEKSWTVKVTVAV*
Ga0058897_1118988323	F102999	N/A	VTVTVYVPAEPEHDSVEVCAAPRTTLVGLRVHVRPAGDTVEARATVPVKPFNGVTVIVEVAAAPARALTAVGLAVTV*
Ga0058897_1118988324	F004601	GAG	MLVGLRVHVRPAGETVEVNATVPVNAFTGATVMVEVAAAPARALTVVGLAVTVKSRMLTVTVTE*
Ga0058897_1118988327	F102999	N/A	VTVAEWLRVPLVPVTVTVYVPADPEHDSVEVCAAPRTTLVGLRVHVRPAGETVEDRATVPVKPLTGVTVIVDVAVAPASALTVVGLAVTV*
Ga0058897_1118988328	F004601	AGAAG	MLVGLRVHVKPAGETVEVRATVPVKPFTGATVIVEVAVAPARALTLAGLAVTVKSVIVKVIVAE*
Ga0058897_1118988329	F102999	N/A	VTVTVYVPPDPEQDSVEVWETPRTMLVGVRVHVNPAGETVEVRATVPVKPLTGATVIVEVAAAPARAVTLVGLAVTVKSRIFTVTVAE*
Ga0058897_1118988331	F102999	GAG	VPLVPVTVTVYVPAGPEHDRVEVWDTPRTMLVGLRVQVSPAGETTEVKATVPVNPLTGVTVMVDVAVAPASALTVVGLAATV*
Ga0058897_1118988333	F004601	GAGG	MLVGLRVHVNPAGETTDVKVTVPVNPFTGATVMVDVAVAPARALTAVGLAVTV*
Ga0058897_1118988334	F102999	N/A	VTVTVAVWVSVPLVPVTVTVYVPADPEQDSVDLRDAQNKLVGLKVHVNPAGETTDVSATVPVKPFTGATVIVEVAAAPARAVTLVGLAVTVKSLMLTVTVAE*
Ga0058897_1118988336	F004601	GAG	MLVGVRVQVRPAGETVEVRATVPVNPFTGATVMVDVAAAPARAVTLVGLAVTVKSLMFTVTVAE*
Ga0058897_1118988338	F004601	GAG	MLVGDRVHVNPAGDTVDVSATVPVKPLTGATVIVEVAVAPARAVTLVGLAVTV*
Ga0058897_111898838	F004601	GAG	MLVGLKVQVNPAGETVDARATVPVKPFTGATLMVEVAVAPARALTLVGLAVTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0058897_11189883

Overview

Ecosystem & Geography

Associated Families

Sequences