NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062386_100017211

Scaffold Ga0062386_100017211


Overview

Basic Information
Taxon OID3300004152 Open in IMG/M
Scaffold IDGa0062386_100017211 Open in IMG/M
Source Dataset NameCoassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5229
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0062386_1000172113F098478GGAGGLKTKGAKAADFKKAAAGDKPEPNGNGKAAKGAVAKIQTLAPADTKLVKRGFVKMFVDFVVKRGLATTDDLAAEFVGRQVDGKKITKERVLRYAHWCVKNGVLKAK*
Ga0062386_1000172114F044385GGAGGMVTRNNSGEVVNEMNVSITQDGTVIWTNTMYSNGRPIVQNISVRDSQGSVRTTNVIGGKILP*
Ga0062386_1000172115F006757N/AMRNFAVLPPVKGTVRMALLNLADFRALATSDLIAMARALPGGTKVHIIDRLTAIVLLLGTRLVDSH*
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