NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063455_100001818

Scaffold Ga0063455_100001818


Overview

Basic Information
Taxon OID3300004153 Open in IMG/M
Scaffold IDGa0063455_100001818 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3417
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameUSA: Hopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008060Metagenome / Metatranscriptome340Y
F052754Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0063455_1000018181F008060GAGGMATIDVTQKSRIYHTLSELNTAFAAIVGHCDTLQQTGLFKSKAAKLLPSFVQELQAECNQEFLESIEALELEDWNRFGKIRQKWEKYIGDPDDVFIHAEERRKELAKQRKKKKGR*
Ga0063455_1000018182F052754GAGGMRFLFLALTFFCGSLLFAKDTPKAMLVVHNDIKGPIIGNAHTEDFQIFADGRVRYSESGNDRKTGTVNIRLTPAQLHQLTALLNSKELRAVPAEIPSQIKVVDFDWEAQLKIQHASGGQTIAIKDFYPLLNTQRPAYPKALMELECFLRDVQARATKRPVRTEDEDWCPEKTH*
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