NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063455_100037942

Scaffold Ga0063455_100037942


Overview

Basic Information
Taxon OID3300004153 Open in IMG/M
Scaffold IDGa0063455_100037942 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Hopland, California, USA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location NameUSA: Hopland, California
CoordinatesLat. (o)38.99297339Long. (o)-123.0674491Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004558Metagenome / Metatranscriptome433Y
F024388Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0063455_1000379421F004558N/AMQQSTALQDDSQDDPRSISPRQPLRRGAALARTSAASSRKASKALIDAVGALVDKAIDRVLLTEDRVTSAADAERLLAGDTETEALTSDIQRVVVLAVPIVRRVIRGARFTKVPWVMVISSAFSIGSVVRTGVRELQVLASLVAYRLEQATGAPGDPALVKKLAVGLYLDPKRDPDLRADKRLPLVRLTRKWIIRGALGRRKKSKRGARALAAAERLDTDALSELSERWAATSRRDDVPG
Ga0063455_1000379422F024388AGGAGGMWVRVATFEGGDTDKLNALVREQMSSGQMTPPDGMSSVVILDDKEAKKRKFLAFFDSRDALEAAEAGFDQQGDTIPEEIRGNRTSVHQYEVVVHDGDIEAAKAARVSLLEGSPDSIDAGLDKTRAETLPRLRAIDGNVGAIGLADRDNGRVSMITLWNSADSMRASTQDADQLRQRTADLSSQKIANVALYDVSMARTVEGTRA*
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