Scaffold Ga0063455_100074722

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063455_100074722

Scaffold Ga0063455_100074722

Overview

Basic Information
Taxon OID	3300004153 Open in IMG/M
Scaffold ID	Ga0063455_100074722 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from Hopland, California, USA (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1284
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location
Location Name	USA: Hopland, California
Coordinates	Lat. (^o)	38.99297339	Long. (^o)	-123.0674491	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006166	Metagenome / Metatranscriptome	380	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063455_1000747223	F006166	N/A	VSVAEFDMSVRGKIVKDASGNLGLQAEPNQVFTFSPNDMSKSLEPLVNSSTQVTVRGQLYKKPAGKKKTKWDASVPLNLLILEIEKKE*

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