Scaffold Ga0066603_10565509

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0066603_10565509

Scaffold Ga0066603_10565509

Overview

Basic Information
Taxon OID	3300004154 Open in IMG/M
Scaffold ID	Ga0066603_10565509 Open in IMG/M
Source Dataset Name	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	537
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Micrococcus → Micrococcus luteus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location
Location Name	Crawford Collection of the Royal Observatory Edinburgh
Coordinates	Lat. (^o)	55.9225	Long. (^o)	-3.1724	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033791	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066603_105655091	F033791	N/A	ITQEYDGVCILANDILLPDNWLSNWVMFSKCVSKTGIIGIHCVEELPPLVDGIHKTHTPFGNNYFTRQLIDTIGGYNIEYDPYGMQDRDYAERATIAGFTNYYLPELRSEHIGHDVGNGTEYRRMKDESLARAQSVWEKYQPIYHNEKQIKCAF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.