NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066600_10023857

Scaffold Ga0066600_10023857


Overview

Basic Information
Taxon OID3300004155 Open in IMG/M
Scaffold IDGa0066600_10023857 Open in IMG/M
Source Dataset NameFreshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1969
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location
Location NameCrawford Collection of the Royal Observatory Edinburgh
CoordinatesLat. (o)55.9225Long. (o)-3.1724Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060633Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0066600_100238573F060633N/AMAGKVDHRDAMWLEANFKVSFYQPEDLLAGMWFMNSLYPGTDREFVELWLLEEDIIEEEYDNFVAKHGFPVEPMVTLEMSNPDESDLIVAYSPEIGWIYEDDDELRTFDIDDANWIIQNNDGKVHILIDGAAYEQDETIYTITEGQEVILQYFFLEDFDDEDLTD*
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