NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066631_10115321

Scaffold Ga0066631_10115321


Overview

Basic Information
Taxon OID3300004212 Open in IMG/M
Scaffold IDGa0066631_10115321 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1257
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042954Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0066631_101153213F042954N/AMEGVETRNGLYGFEFRDVDLRRAAEGERKSYDIKQLWQRNHEILNLVAQGFSHVDVAEILGVTPACVSQTVNSELGQRKLSDLRLGRDEEAKKNLEKIRVLTAKALKVYHEIFDNEDGQATLRDRKDVADTVVLELSGLRAPTKIQTSSISTILTADEIKEFKERGRKAATQEGVIIDITPEEEYGSAGQST*
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