NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066650_10312658

Scaffold Ga0066650_10312658


Overview

Basic Information
Taxon OID3300004239 Open in IMG/M
Scaffold IDGa0066650_10312658 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019952Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0066650_103126582F019952GGAGMVQTVKSHRIPSGWRMILLEKPLALHRIFFSIKVLTDSTMGYRSQISFDDPAFLSYYTFDGGVQELEAKGEGICQGVIWAQNVSSTELLFVSTEVLV*
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