NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007787_10002559

Scaffold Ga0007787_10002559


Overview

Basic Information
Taxon OID3300004240 Open in IMG/M
Scaffold IDGa0007787_10002559 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6579
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030415Metagenome / Metatranscriptome185Y
F075742Metagenome118Y
F085263Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0007787_100025591F075742N/AMKLKFGNSVYKKDLSNSIYQQSGANFGLTVNGGMLINNRPDGQTGIQQAAEVKKVIKKAEKVQMMSEAVYLGNIKAEMMEGPEMD*
Ga0007787_1000255910F085263N/AMAKSKLIDEVIQDDVVVSEEVAAEVKKAVAPKDAYALPELKKKDIVETPGHARRDFRN*
Ga0007787_100025599F030415N/AMKSTPNLPASSRMKSPSGGGPQIKNALKAKALAMSGGVPSKGAKVAVKAAGVAKKLVKKAK*
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