Basic Information | |
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Taxon OID | 3300004240 Open in IMG/M |
Scaffold ID | Ga0007787_10069425 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1605 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F001165 | Metagenome / Metatranscriptome | 760 | Y |
F055681 | Metagenome / Metatranscriptome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0007787_100694251 | F055681 | N/A | MIGFLIEFKRWYLVIRGPKGRVYSAFGFANQMPVMLPDRSITLDEYLANHDDHLVFTDDHLVFTCNGKE |
Ga0007787_100694254 | F001120 | N/A | MTQKKSPINFDKTIAGFNITERGVKSYTKSIKLGPFQVTFNARESGVHGSISIPGTGLSKRNIKLL* |
Ga0007787_100694257 | F001165 | N/A | SFKTMSALNDTPKPRIPDSVDLQRLQAMQLVAKMKESADRHGIGFVGGFISPDGQKFMMTNMDEADTQMLLPDDLR* |
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