NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066610_10161577

Scaffold Ga0066610_10161577


Overview

Basic Information
Taxon OID3300004276 Open in IMG/M
Scaffold IDGa0066610_10161577 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)743
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)165
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024225Metagenome207Y
F036475Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0066610_101615771F024225AGTAGGLKINFTTEKIDVKLYQKSILSYIYDHYYFKDYHKIQIQDEWEINVRKLSDFKWNFYDKNIKNLSKKMPHGVTGNNVIQCYATDENNRMYYLQNMMVICHELSHMILKIYYPNLRGTLTHNDLWGKAGEERNFFSTEIHNRVYEGRTKRFSTWHKNSEYYFYGVDID
Ga0066610_101615772F036475N/AVEKRVSNPVYKKVIVSMGYPYAKKEIMKATDEELKRDMNLIYNRLKKHFKKKELKNEIEFSNSISDIKVPKFIEKQVGEYF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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