NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066605_10109206

Scaffold Ga0066605_10109206


Overview

Basic Information
Taxon OID3300004279 Open in IMG/M
Scaffold IDGa0066605_10109206 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F073418Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0066605_101092061F006728N/AVIVMTKLDFNNIVVRHNGRTISIAQHWSRTSEGDFLNAQEIADVGELYHDDYDPIRFDDTIDGLINALQAIKKDIEL*
Ga0066605_101092062F073418AGAAGGMTFDKSHLKLIRQSMQDALDQAGIKDVTIKVGNCSYSGGEATYKVQVLLDGAESHEQSALGQMASMLNIDTTKIAEINGESVSLTGYNAKARKMPWQVKSLVSSSQWKLTDSQAQRMFGEG*

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