Scaffold Ga0066605_10149904

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066605_10149904

Scaffold Ga0066605_10149904

Overview

Basic Information
Taxon OID	3300004279 Open in IMG/M
Scaffold ID	Ga0066605_10149904 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	927
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella → Bordetella bronchiseptica	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028553	Metagenome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066605_101499041	F028553	GGA	MAERQGAFADLSVENRFDDFDLPVSGSMRFEKRPNQSRSELDLYRTFDGSMGSVTPSMGYTTEETKYRDGQADVENRARTVRLGLDGATTLGPVDISGNAMGSRTMQDNTYTFPFGSFTQGSSSTFTKLGAAAKMGAFDFNVSRQKSTGMEPFYSGSIG

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