NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066606_10061312

Scaffold Ga0066606_10061312


Overview

Basic Information
Taxon OID3300004280 Open in IMG/M
Scaffold IDGa0066606_10061312 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1474
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012463Metagenome280Y
F029745Metagenome187Y
F040056Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0066606_100613123F012463GAGGMKIGDIVKLVMDPNVDWMFNYLEETFQVVDFPTENGVELKMIGTVPDWIWIIGKDNLELTDEEG*
Ga0066606_100613126F040056GGAGGVQTQADFRIGTLLRWHGDDQEGDDIDELGIVIQMPGETAYYYIAWGTTNTVSHHTPDMVEESLYQRQMEIVG*
Ga0066606_100613127F029745AGGAMASKAPRVGDVVKSRVTTESLAGFIVAKEGIHVWVRFFDTKFEDGDSWDVYTRRDTLEVLSRANAS*
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