NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0065726_12024

Scaffold Ga0065726_12024


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_12024 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27990
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011949Metagenome / Metatranscriptome285Y
F012991Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1202419F011949AGGAGMPFVVENDTTISFAEFSDMLDRDQRLFEANEGLSDDIIDNHLVRATERILDRIRSTQWWQEYYTARNTTVTINTRADIPAVDPDRILNRQNDFTDLCVYTALTEFTLPLIADFGREDSSERNKMGYYQQKADGLFAELIGAGDWYDFDDDSVIQSDERQPGAFNLKRIR*
Ga0065726_1202421F012991AGGAMAYIYPAPGTSSSQVTLNIVTVAGTDTLGLDVPALQDVTINNANDVFTWTQLDSGSKKQIATTATNSLSMNIVLDQDTFFGTTVAGEDAQTAGIFGLSKDKTKIEFTLFLGKEDDGSAGKTVTGQGYITGLAPTVSADSPVWVSPITITVDGDYTVS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.