Scaffold Ga0065726

Basic Information
Taxon OID	3300004369 Open in IMG/M
Scaffold ID	Ga0065726_13385 Open in IMG/M
Source Dataset Name	Saline microbial communities from the South Caspian sea - cas-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004369 Open in IMG/M

Scaffold ID

Ga0065726_13385 Open in IMG/M

Source Dataset Name

Saline microbial communities from the South Caspian sea - cas-15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20025
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (27.78%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

20025

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (27.78%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location Name	Caspian Sea
Coordinates	Lat. (^o)	41.916215	Long. (^o)	50.672019	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Caspian Sea

Coordinates

Lat. (^o)

41.916215

Long. (^o)

50.672019

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006866	Metagenome / Metatranscriptome	363	N
F008239	Metagenome / Metatranscriptome	336	Y
F010834	Metagenome / Metatranscriptome	298	Y
F019312	Metagenome / Metatranscriptome	230	N
F031655	Metagenome / Metatranscriptome	182	Y
F036928	Metagenome / Metatranscriptome	169	N
F039095	Metagenome	164	N
F046627	Metagenome	151	N
F061808	Metagenome	131	N
F063568	Metagenome	129	N
F081234	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1338511	F006866	N/A	MEEQAKSANVLINRNNLNNLFELLVQVHLRGQLSRDEQAFLKNFIELPEAPTRENRQARRANTQAIKKLFREEAKRKRDE*
Ga0065726_1338512	F005010	N/A	MIRKYKHIREVEKFLSMLMIDNVNLSIQASRFGWTTELQDTITNNALLIRKYQRRLRLIKM*
Ga0065726_1338515	F008239	N/A	MREILLEMYEKLWNADKDKFAWNVILKDTLEKLETLNTKEI*
Ga0065726_1338519	F061808	N/A	MNKFRVFVKGKFDVVFDTIEKARDCRRALQQLKYEGIEIIITKEDIDPR*
Ga0065726_1338522	F019312	N/A	MKHTEAIYKAQIAFDEALSDKETIDQLLHIDAQMYANTGIETSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQAMGLTR*
Ga0065726_1338523	F046627	N/A	MSFVKGDIGEDLWCDYIKKRGHTDIIRAPKIKFYDWDVKSTYQKNELTFEVKHDSKAYWWADRRGTPEQPNLYIEFKNTNKDEDSGIKASKAIYYIYILKRDECNTAFVFERKGLLNHLEQVTYKIVGNSATGDDNALGWIPPLESLVTQPFFVNKILL*
Ga0065726_1338524	F063568	AGAAGG	MSNTKISKLLLCWLWTQGHKIKEYKEAEGITTVHDKNEYKFDVSGNYGGYRVEYTHKTFSFYDGDRKLKDTDLNEFC*
Ga0065726_1338527	F031655	N/A	MNFAIDIAPLAGLLIGVNYWNSEMDDDYEKPKYHSLQLCFGLFAIVMTWATEE*
Ga0065726_1338529	F039095	N/A	MDELKDEDYRWVRGGSKSIALLWLRQKNQDLMQIANALKPQDPSNEYEMDIFIDLVSIYSAIDASIGMVEDVQQMVWAAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK*
Ga0065726_133853	F036928	N/A	MYSKLGYLIKALKETNERDEDIKVAKGKYQYPRTLIEALGKWR*
Ga0065726_1338533	F010834	AGAAGG	MKKDLTLHLKLPKTISLNALYAGKHWTFRKRIKDEYKKIIEAELARYDHHIAQSMSIHIRYNTRADVDNLVLVSKFTADTLVSNEWIADDNPKHYNRLTITFDPEVEKNYCEVEVRLKNAYERN*
Ga0065726_1338535	F081234	N/A	MSTKDQYIDLCEARVDALVNEVRLLKEFIVRDYATKGISGQMAMDLFKAFKENENNSQDKAD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065726_13385

Overview

Ecosystem & Geography

Associated Families

Sequences