NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_13907

Scaffold Ga0065726_13907


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_13907 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18272
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018167Metagenome236Y
F038154Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1390717F038154AGGMTYDEFASKSLEYYMDMVRLIDIKLKYRMSLTDDERDINGYIMETQERNKLNELRNRFEKCWDIEE*
Ga0065726_139079F018167N/AMIDFNTFQLDRLSKLIETIQGYTDNNLRFPKAGELVEKAYAEYSNGLLKRVNLPGIDLVGPGGTTYESKVTQFANKSQMAVRSLILKNRRAAKDYEDKLADYFIITDVKKGKACCIPSAKLYNFKDNGAVMTASADPEVTDFFLTGYNRLEEREEVRDYFEESEDFDLSFIRSI*
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