NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_18481

Scaffold Ga0065726_18481


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_18481 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10393
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005072Metagenome / Metatranscriptome413Y
F019730Metagenome / Metatranscriptome228N
F071128Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1848114F019730AGGAGMAGSDIKVVSASQASLSNTSSNVAITVTLVSGPTRLKGFIAEPSDVAGVLTFKDGGTDVFEINTGNVDAGASTFQMNLPEEGVKFETSCQVSSSIAGANVATIKGVTLFHA*
Ga0065726_1848118F071128AGGAGMATMTYTSLKTDIQTWAENTGTDFTNQLDTFIQNTQNKLSRDIDPVGFNQNVTSSMQIGDRFVTLPSSIEPMLLNYLNIIDSDGNRVFLEI
Ga0065726_184816F005072AGAAGMEKLLQAIKKKIKSYKTDLATNLLSKGVNDIQEFKRVYGYGQGLDKSLEIINETIEKYQKGDIEDDD*
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