Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1000818 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1000818 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49814
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (20.00%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

49814

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (20.00%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F008563	Metagenome / Metatranscriptome	331	Y
F009608	Metagenome / Metatranscriptome	315	Y
F013325	Metagenome / Metatranscriptome	272	Y
F014036	Metagenome / Metatranscriptome	266	Y
F024830	Metagenome / Metatranscriptome	204	Y
F026041	Metagenome / Metatranscriptome	199	Y
F038691	Metagenome / Metatranscriptome	165	Y
F059026	Metagenome / Metatranscriptome	134	N
F102062	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100081810	F002033	N/A	MNKFNIFLSKHGVKIIIVLLLLSYFKSCSIDSEVELIKKEQRIMNSEIDTLSSQVVNEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKED*
Ga0065861_100081811	F024830	AGAAG	VANTPIIPGVPTPISGDPKCALTLCGRIIAQVDCIIIIMQGTNGCIDLQFFGKDGKPLDLTNFSEIQIMLYNEFDCTIANFWWPSIPTGCKGLLMTILQYTDAKGVIHNKGKIRICLDPACTKTSPSAIFAEILLTSLNTGGTSETSGIPCLQIAKIIPSRIYENGCDDGCS*
Ga0065861_100081837	F013325	N/A	MAKTIKMEQKKYATQAGPIGSAEEQAALANEVIDPKDVKEYIPRKMSEIIKDKKAALKKNEDLLRSLQTNEYDIPVGTAKLYKQIMKFLEKEADWGHTTATGLIMLYSNLKEQQPVIREKDWDGIIKLRGTSITIFWSMITSMKGKGFFAARDFVEMMAAFGQDLSKVVGQVHTDNQALRENHTHMAELDQEVNRPEVILDVAIDKYNEAEEELNKLMDEVDPIVETV*
Ga0065861_100081838	F038691	N/A	MGFHRRHIDNDQVIRFYNDGGVERIRSWYTRGVDALITETGLASQVGSILSDAEWIQLGTVHQDDEIIKIIQQHLGVEEIKK*
Ga0065861_100081839	F059026	N/A	MEHIKDYKLFKESLDTELLTEKYSSDILRQFAAQDNGSRWRGGIAKDMQKFANLALDKISDADFTTTTPEAYWKGGDAKNPNKVGFFVDADPGFIKWAKANKKYLPGGLSLGNISKYGVVLSVIRGGIGMYHGFAMDRGSSYSRHRKGTEERYGILAKDYDTNSLYNGWEGRPAAKVTRKNLIDAATRVYVLDLDSLRDKYDVSGLKSDRANAKSGATALKDAKSIKKENQARYDAILTDRAAMTDVDKSVKDSIELLNQHISDALKDGTMDKFGNLTIGEDPRGRSIKITDGANYIKNLLDDYQRYKDYERQDKEAKADGREDNWYSKEIKNYAKRIQDRARAVKAKNYAW*
Ga0065861_100081847	F102062	N/A	MKILIWIKRGEAITGDISKYYTYLPFNESYQEWVQVEITQDEFVKLEDNEISR*
Ga0065861_100081852	F026041	N/A	MIKIVKEKPIKSTTSVEGILVQVTGGQWYGITAFRPARNPWLGRASKSTTTGRMEFTAGSETFQMQFKEKPTFEELKEILIDVLNGAEAVKCKIAY*
Ga0065861_100081853	F014036	GGA	MEMFACLFIIGLSFLFHLIVYENDWVEKWYWKVLGGGGILLLVFAAIMGY*
Ga0065861_100081859	F008563	N/A	MKKKIKLETHMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVTNPYANIKKEEYQITGSRGDKYTVTNRNGQFSCNCPAGKFRGTCKHSTQVQKELSLVE*
Ga0065861_100081864	F009608	N/A	MYINRYNMKYIKPLNEARPMFQDTPNEFAYLDFKKWAYKNRGKIKKELSGITDGAKLFIKLADIWRWDWANKNAKEWSYLHSTDLAKKDFGRALAVMLKTDDLIIKKSGNKLTDLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1000818

Overview

Ecosystem & Geography

Associated Families

Sequences