NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1009239

Scaffold Ga0065861_1009239


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1009239 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8285
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054682Metagenome139N
F064512Metagenome128N
F086848Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0065861_100923910F054682AGGAMTRSRSRKEVPDVQVPKRQATVWEIESNAVLMELEVRKEQHHQKWGIDRLITLVDIDFRVKFWGQMGRVWDSLEFGDIERLRKAASGMAKGYDALEKWAEDNEVNPNPKTRCIEWKTKDGHVVAVVSTINDSLELQRHRKDLGTIWTLEEFEVIMADPMVQQIMAIKAFEPTAKVTRFKANENFGKGSGFDDMEDDLEPVYGGAEPPKMFHLPHKK*
Ga0065861_100923911F064512N/AMARRASITTRYFNRTLTDADRTILACAGCGDISKGFKNALDCFAVLWELGYRPENDLNDFLGLDKEDDFKTLVGDSDKD*
Ga0065861_10092392F086848AGGAGMSIEKDLEQLIAKIAPSKDIAGGFMSRNDIIQLIRKVATDASLIGYCHAEKLTRERMEKKLTMLEQELTIIKDQLKDAEFDLIAANK*
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