NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1019555

Scaffold Ga0065861_1019555


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1019555 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11665
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F002933Metagenome / Metatranscriptome519Y
F003265Metagenome / Metatranscriptome496Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_101955511F000166AGGMANIPTPHDAAYFAQSVRKWQQVLSLGDWRIEKGTKPAKQAMASVEFNDAARLATYRLGDFGSEKITPESLNKTALHELLHVFLHDLIVTATDCKSSDEELEKQEHRIINLLEQLLTKDSHGID*
Ga0065861_10195556F003265N/AVRWLLLIPFVLLVNAKSPCTITEFYGISSLGDPGLRHSQLSMWLSINGDNCSSDKLVVIWNNLAMWAGTADSSELRGKILYFYSKATEREKK*
Ga0065861_10195557F002933GGAMIPPIYKWYPMVQPESFPTKTDALERRAERLTEEYKQSLKMKKIEDKIDDLEFQLYVKKAERNQLSLEIFTNRKLDIFI*
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