Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1040610 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1040610 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10875
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

10875

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (85.19%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F014488	Metagenome	262	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_104061010	F014488	GGA	MNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAKMQKMNPSIDLNQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREQCPKWNKEAWAKGLRKRKCK*
Ga0065861_104061012	F024265	N/A	MNEAYTTPEARANGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0065861_104061015	F010463	AGAAG	VNYPQEMVLAATIHRVKMCEDKLREFEQMVSTLTSTMAQNRAELASKGLERFVIGVSTPLDIPKELVPTFGKHRAKRNRSHSTVVKRWTLWKHQLDSGMSMSELARAWGVHPTAILFAKKQNFIVRKAKGGSR*
Ga0065861_104061018	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKKK*
Ga0065861_104061020	F033350	GGAGG	MSVDVDVPKVKWSMLEWKSSEEKPKNDEKVLMDIGGEVCVGRFVDGSFVSRSWGHSENDVRLWASWPKAPQW*
Ga0065861_104061021	F023833	AGGA	MKSHSDQLQDIINDAMRKAASLEREKCAELVQRLADGTEDQVIQDILNEVVVALRRLTDER*
Ga0065861_104061026	F005846	GAG	MKSLIPLPARPDGSALPASDKVYSKNSAIEGKLNGWRGLFDQETKLGYNRHGKLASNHNLMAERLVGAGIKSRFIDCEIMGQRTKTGKGTIVVMDAFDPMNPKPYAERVKEIEHLEAVTFDVQDNKLLRFVRLAHNKINAIWEEMNYQNNRAGEVIWEGFVMKALGKYPFITKSNYVSPEWQKQRIRW*
Ga0065861_10406108	F007164	GAG	MSEKQIGIELKKQIKLLNEAKDRAISSMGETISLAADAGQILLSAREENLNIVEILLISGVNEEEGRRLERVAKARPLLSAPNPSQLKQLALWSGILPDPIETSNPKAETAWHSYIIKARQWLTRKSPGSWSDDQKRQFIEEARPIVEAYREAGGRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1040610

Overview

Ecosystem & Geography

Associated Families

Sequences