NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1045515

Scaffold Ga0065861_1045515


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1045515 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1782
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012723Metagenome278Y
F017226Metagenome / Metatranscriptome242Y
F030875Metagenome / Metatranscriptome184N
F101912Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10455151F017226N/ALHLIKWAVKRGYSVAVYGEGEFDGIHHTYKEIKDNVEACDMGEMLLLTPSVKQEGKWKRLASFAYVFEYEQAPDETIYDYAVNEISDAWSAEYNATA*
Ga0065861_10455153F012723AGGTGGMSNDDIKAYFDGSNITLAELSAMTGKTIQQLKAILMGGK*
Ga0065861_10455154F101912GGGGGMQALAIFKNKELAPVSYIANIRGRGIKHIQTLVYRFADDNGFNYSHITYYKRRDEYPTIAAKQSFPYYKEV*
Ga0065861_10455155F030875GAGGMKNTKTLKIKVITTRPAPKRITQPASHWRDIMGGMKRGHWFEVECETRDDVYNRVGAAANTYCKGRYSFYKTAKNKYIFEIIKG*
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