NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1001879

Scaffold Ga0066224_1001879


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1001879 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3147
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005454Metagenome / Metatranscriptome400Y
F022015Metagenome / Metatranscriptome216Y
F023593Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0066224_10018791F022015N/AMYYQSKSNITWKQAFAEVNASVLKHEIICAIASEVAGKSVENLIGFTNEQRDLVWNDYYNTTELCG*
Ga0066224_10018792F005454N/AMRIIKHFNPHFPERETYKCTIRYTTKFGSLDEVNQWRDDQLKNEDYYKSLEESNTKAAGEFYETLTYKGD*
Ga0066224_10018798F023593GAGMNEIDEIAQYQADVILETLKEQVEWAIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG*
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Institute for Fundamental Biomedical Research
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