NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1027252

Scaffold Ga0066224_1027252


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1027252 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2439
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000993Metagenome / Metatranscriptome811Y
F033949Metagenome176Y
F083256Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0066224_10272521F083256AGGAGGMKKMEPKNIDVIINKMKKMLNEKELGIKIDFGGARYDADSFKVTLEVSLPNARTKEEKHLEALMRMRNANPKYYRDWDLTKIIKIKGVDHTLNGYTNRPNSKKPFIILNLLNNKKYLITEEQVDRLFGDPTWVDTLNFNSTEKGVSNE
Ga0066224_10272525F033949AGGAMNTKVKWFNEDYDLGCDVSKLEKLGFSNSSWKDVIAPSYSNEKMQIFFLNKNKFDEHKNRSKFSVNKILDDENIETIYETDYFYKVLQLAEESK*
Ga0066224_10272527F000993AGGAMTKLHHTEYKKNYKKYILDCVQLDCEEKELKTDQEKINYIFDRFYDEYGFMIEQVGKQKAMSEWLSGLALPIEYYYDDIVKLAIEMGSIDENPSDKLRNKVEQGYFDFMANIILGFEPKKQ*
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