NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1075889

Scaffold Ga0066224_1075889


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1075889 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025510Metagenome / Metatranscriptome201N
F026884Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0066224_10758891F026884AGAAGGMQKLKLKDYLQTMSHPSKIFDIEVIIDDMVYVGKEIRAKDKEAALKIMSVMSGGEVTTQSEIIHLQERMVH*
Ga0066224_10758892F025510AGGAMKYIKKVWVWLKQTCTKFLDWVDSLLEPKPVIKKRGRPRKKK*

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