NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066222_1017924

Scaffold Ga0066222_1017924


Overview

Basic Information
Taxon OID3300004460 Open in IMG/M
Scaffold IDGa0066222_1017924 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7233
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001582Metagenome / Metatranscriptome668Y
F002716Metagenome / Metatranscriptome535Y

Sequences

Protein IDFamilyRBSSequence
Ga0066222_10179246F001582GAGMPLESSRDFDSYVNPQIGGVSATFFEVQNSLWDSRLGLINTWFDIDSGNSTNINIIIDQDFFNIQGKSVSVEGYQPRAMVKATDVPYISIDDRLVVNAITTNNGSTLTPETNFIVVNAQPDNVGMVNLVLAVQ*
Ga0066222_10179247F002716GGCGGMSQYLMETEEDMAGYLDIDYGHGVSAIYTNSSGATSTINIILNNEYVEQEGFEVAVEATQPMAYCRSIDVPSIAHGNTLQVSAVKDVEGNTLSPAANFTIVSIQSDRTGFTALELEKI*
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