Scaffold Ga0066222_1061642

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066222_1061642

Scaffold Ga0066222_1061642

Overview

Basic Information
Taxon OID	3300004460 Open in IMG/M
Scaffold ID	Ga0066222_1061642 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2511
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074038	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_10616426	F074038	AGGAG	MDIEKIQKQVADLKTNVSLLEHVTIGSFSDDLIRSLHEITDVLDNLQPRVIDPADLSKEAEQKVLNTLSELTARLDRLEQDQLTYDNAVDAAKDAIGDMSFAAHVDSVDLAISVYPR*

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