NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1001181

Scaffold Ga0066223_1001181


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1001181 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11143
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F025981Metagenome199Y
F045546Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0066223_100118116F025981N/AKEAVAVLRSIDTSLQVLANTKSGNVTTAFISKKALAERLGLNSVAIDKLVYQGITSKGKSGLVEGRHYCKLDPTETNTSNFLYDSAKVLADAWNSFQNYDA*
Ga0066223_10011815F001215GGGGGMASTSTNKSPCLIDRPFLRGARISNGTTVVSPTNPAFSDLVQLVRVGDLPTEDAGLVEDIFVVSNEGYPNRSGIRTCALGFYVYAPNQASPSTSTALLISKVEVGLSGGTEGMIQHLELPAVLAPVPSVGDTNLLRPIETGKGEGLYLEKGYILCAGYLGNGPSAVSGGLSPSGITIWAQGGFY*
Ga0066223_10011816F045546GGTGGVSRKKGSDNFNFKSKIGIESVKQVGSIKGSDDPNQLLRPLPFHRRFRPAVGTKDFGILSDYNYASVWSRWRRGYELSMYTQGANSGLIYSSFKYYVSGTAGVGGYIPGIFFVYPTTRADTRMHMVGIRPRDTFNFLDFGISVAEVTLYDETTYAVKLSQNFGSPISYFHGEVLSNRFNSDGTSKTYGYNNYTVIGVGTDGVIVEPSINPIFNTLFLSVAANTSWTVVDANTMAVPATGPPAVGEFLTTEIRVQCSCQDFLNREGFNLYDTSIKQRYPFTRVQNIDAGYYDAGSSADTRVSTSSDYPGYARTFGFIYLNEIYNIATYSETAQYSDPQLFYFQPKWCKHIYAAFWDLYRKYGLEGSTSYYLPQPNDEPMNEYYREKFERDLIKQTDFLKRNKDFAWWQKYSPTLDDLPRRLLYSDTYNMVAKTLNFGQLEDLTELQDTNFQMYTIEQFDPLNPAGLPQDTYDGGTYANGELVIQPTTILDGGLYSNGVLIPPATYPAFINGGTY*
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