NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1015372

Scaffold Ga0066223_1015372


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1015372 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2814
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F006264Metagenome / Metatranscriptome377Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0066223_10153722F006264N/AMEDHSANFRQRLYGQSEVCARKALEWLQKDLQAEQELTPHEVYCLASAAQILLNIRDQYGKK*
Ga0066223_10153723F001059AGGAMATYDIEALQADLPTAKDLAQFVYDKTQIALDLVGKRKEEQYLVAKNALEGKKVPAEFLTEENPYVDKKDTIPEDPLKDLPLRSSDLPDQDSLVHFFGATNMPHPLDPQSDKKVYIDFKKYENGLITYQITGPVEQMPVGARINKYGQTVPEKYTWLDPRTEELVMRRPDGTYTPAGRGLHTYLVGEKGSGVWNLIDKDMVTITAKNISDPWA*
Ga0066223_10153728F012670GAGGMFDEIRPEGSLVTSPEKLARTKARQAEKRAMKLATGERLPKEAPKAPGRPKSVVNRVTEYGSLFNKLNEERLSKGLPPLKTAMEVLIDAMQSDELDIKDKARIADKLAPFESSRAPIISIEHVQNVTKDEESTAEEAMDEFLESLRKV*
Ga0066223_10153729F001915N/AMEKNWEWSLADPRFDVEDIVKLSDSHFGCEADGILRRDKQVFRHRLTVACTEQLFNKGREFIAVCRSTDIVDVGIAKTREDKLLAFCWFDRGGYTTYSNEEISNAKFHHLDLTLSARMRVALLNEMIDHHILWAHTWSIPVVCSTSIRAEHSGFMKMHKKRGFTVNGSYAWLRTEEGVKCLTK*
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