NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1023216

Scaffold Ga0066223_1023216


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1023216 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015532Metagenome / Metatranscriptome254Y
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066223_10232161F015532GAGGMTLQDDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLK
Ga0066223_10232162F046006GGAGGVKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNNTIDTMWHEIVQVKETNISLYQFIEEHGNDITGR*
Ga0066223_10232163F090883N/ARMVSIADRMKRINNCRDMMSKATCPRMQAMWKRNYEKLLKKYWEEQGERILRAAGKIH*
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