NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1162616

Scaffold Ga0066223_1162616


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1162616 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1513
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F009685Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0066223_11626161F000852AGGAMTTKREYLKSQGITVGVRGRFSGAAKVAIQEAISKGVTFSDPQPVTNKAK*
Ga0066223_11626162F009685GAGGMSDQYVDSVLAEAQRLLWGGSETENIEAHNLISKLIQDRMALKNLT*
Ga0066223_11626164F001019N/AMSTYEPSLEILEMEYSCSPGGVDTFEVYDKTDMPLSIPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYGASR*
Ga0066223_11626165F000263AGGMTPEENGLPSHLQRLVNYNVSGLDIMHGELKNLMLIAEQKLADAIEVEEESEEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGVRSENLKDGH*
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