NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1222786

Scaffold Ga0066223_1222786


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1222786 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021755Metagenome / Metatranscriptome217Y
F044492Metagenome154Y
F056507Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0066223_12227863F021755AGCAGMKRTIIKLHNKKFADLVDHNVRECIQKKENYEIEYRGKSMILTPEELKTKCVGRQYIAEPKFGDKPYHLLSYLWEPTKTTEK*
Ga0066223_12227864F044492N/AMSSEEQITVSINKQPSFTEIWHEGSVMYNETEYMFWLINPRGLDDQGREYEMEIRWWFKQVPMEIRKMSDQIIKDFKENRHDTRNSENRGSI*
Ga0066223_12227865F056507N/AMIQGTAKTEAQYRAIYLDSSSSLKEFSTDRRKYHKKYILNEVVEDEDSKA
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