NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063356_102861561

Scaffold Ga0063356_102861561


Overview

Basic Information
Taxon OID3300004463 Open in IMG/M
Scaffold IDGa0063356_102861561 Open in IMG/M
Source Dataset NameCombined assembly of Arabidopsis thaliana microbial communities
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)743
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Walnut Creek, California
CoordinatesLat. (o)37.931388Long. (o)-122.021761Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080250Metagenome115N
F093961Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0063356_1028615611F080250N/AERDRRLAEAWKAPPKQESSLAILIRDPSVPIERIADVLRAECAKCGRGKPGGAHWRWTKLHYLIAHFIEQSGAKRTDGCIRDWINTVNGWETMHGRQRLDPQPGSRDHARIRELLRGPKSRRL*
Ga0063356_1028615612F093961N/AMIRGTAQSAAYAGGHMVFKIYRAGDLHNKPGKPGIFNVGRTHFYDVIEPRLEKACLGDRAVGYTDRSVERVQAEMIAEGAAAPRLARITKTAR*
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