NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068972_1596689

Scaffold Ga0068972_1596689


Overview

Basic Information
Taxon OID3300004478 Open in IMG/M
Scaffold IDGa0068972_1596689 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)734
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016550Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0068972_15966891F016550N/AMKKTMVRCLVLVFTVALAMAAVADDQEKATKEIKKITSISVDSNMRSVVNRSMAEMLKAKRLDLVKERQDLNVNYGGLFLVHQLTAGGAKMEDIAAQLKAGKKIFDIANDDHANWKQINSDAKKLNKKIDDNIAKYFMDSKKLAALDQTDEYDAKADKVAADSDISKDEYADAQSRYQHLHDLASSQLPTGDANGINQGAGVPPAAASSGKR*
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