NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066502_140577

Scaffold Ga0066502_140577


Overview

Basic Information
Taxon OID3300004577 Open in IMG/M
Scaffold IDGa0066502_140577 Open in IMG/M
Source Dataset NameFreshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 20_HOW5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Source Dataset Sampling Location
Location NameUSA: Lake Washington, Seattle, Washington
CoordinatesLat. (o)48.3807Long. (o)-122.1599Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037232Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0066502_1405771F037232N/AFHSTMSAFKIFDTVNTIYGNGFISAVRPDCYVVQLTNWALAQGQSPTLYLQEDAIQKIPGAFPHTTVLTTYGPARIESIRADNVHIAKPINWKLANNSCATLYLQPDGVKLHQTPGFIPGDEVMTVYGRGYIESHREKDVVVKLRNWKLAQGQSPTLYLHPSACVKIPGLNVGDSAKTVWGMVKITDIRRDGTHVCTALHWKLANNCAPTLYLAPEAFALLSIKP*
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