NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0008278_1230696

Scaffold Ga0008278_1230696


Overview

Basic Information
Taxon OID3300004595 Open in IMG/M
Scaffold IDGa0008278_1230696 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061006Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0008278_12306961F061006N/AKRNPRENDSPETEPFKRIDQLLPEKPGQSPEDRANDIDNVLQWMRNRGVDQPEFKDEPFQKAQQMPMPDSRTPEQKAKDVDDVLQWMRNPRENESPSTEPFKRIDQLLPEKPGQTPEDRAKDIDNALTWVRNRGVDQPEFEPTPTFDKFNSIPLDRRTPEQKARDVENVLNWKRNPRENDSPETEPFKRIDQLL
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