NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068927_1348751

Scaffold Ga0068927_1348751


Overview

Basic Information
Taxon OID3300004610 Open in IMG/M
Scaffold IDGa0068927_1348751 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016550Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0068927_13487512F016550AGGAGGMRTGMTRFFVLVFTVAVAMTAFADDQEKATKEIKQITSISVDANMRSIVNRTMADMLKAKRLDLVKERHDLNVNYGGLFLAHQLTAAGVKMEDIAAQLKAGKKIFDIANDGHANWKEINSEAKKLNKKIDDNIEKNFRDAKKLAAVDQADQYDAKADKVSADSDISKDEYTEAQNRYQHLHDVVSSSQLPIGDANLRNSGAGAGSTSGVSGPPAAVIGAK*
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