Scaffold Ga0049105_1001008

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0049105_1001008

Scaffold Ga0049105_1001008

Overview

Basic Information
Taxon OID	3300004630 Open in IMG/M
Scaffold ID	Ga0049105_1001008 Open in IMG/M
Source Dataset Name	Worm MetaG Olavius vacuus BAHAMAS.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11539
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Malacostraca → Eumalacostraca → Peracarida → Amphipoda → Senticaudata → Talitrida → Talitroidea → Hyalellidae → Hyalella → Hyalella azteca	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Germany: Marburg
Coordinates	Lat. (^o)	50.8	Long. (^o)	8.81	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067176	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049105_100100811	F067176	N/A	MPVFKQLLIDFFKLVGSQLILMLLYDSLNLTISGVHQSHLGSLGYRSEKVKLRGIRDVPVADLLKNRIIICNVFGSY*

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