Scaffold Ga0058899_11082724

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0058899_11082724

Scaffold Ga0058899_11082724

Overview

Basic Information
Taxon OID	3300004631 Open in IMG/M
Scaffold ID	Ga0058899_11082724 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	533
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group → Stenotrophomonas maltophilia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location Name	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.531427	Long. (^o)	-72.189946	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001357	Metagenome / Metatranscriptome	716	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058899_110827241	F001357	AGGAGG	MKRIVLMALLAMALPMALFASSSVDFTNDGGVLSGSTAGLTLSGSELIAANGLGGLGLVTGGLGSVSFSTGALLSGGATALQMGGSFAGTGAFDITGNGTDGIPTGTIFDGSFNGPVTWTLVTLANGTHNYTLTGSIKGTWYNGATVNG

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