NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066395_10226666

Scaffold Ga0066395_10226666


Overview

Basic Information
Taxon OID3300004633 Open in IMG/M
Scaffold IDGa0066395_10226666 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)991
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002886Metagenome / Metatranscriptome523Y
F065155Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0066395_102266661F065155N/AMSEAVLAQPPQRIHVAPSRGRRNRLSSLEALERGFALFRSTFSRQAWRYYTGTAPLVFCFIPMWVVN
Ga0066395_102266663F002886N/ALRDLEYVMVWPSSLWLWRLLIPTVLFAALGASFWLWVDSTTGEIFTGLGIAWVGLELALGPTARARIRTTGATIDLPLVARTRRAQKVLAKIDAAVRATRGIFEQTTTPAGIALPAEGHAQTRSEASATTSITTATQTNGS*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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