NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062388_100614974

Scaffold Ga0062388_100614974


Overview

Basic Information
Taxon OID3300004635 Open in IMG/M
Scaffold IDGa0062388_100614974 Open in IMG/M
Source Dataset NameCoassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016578Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0062388_1006149742F016578GAGMRLIAFIVASIAAIAPAAAQGWAEYAYPRDAFTVAFPANPKVETTTYQAADGRQVEARVYSVAQDNALFRMTVADLPAMEEAAVIDHAIKTVSQGGEIKVDIPHRISRMYGRQLSIVGPEGSRSMVAAFYHTGRLYLIEGKAFPSGVNATSDLIRFQQSLVFTDEGTNRAQ*
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