NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066616_1003184

Scaffold Ga0066616_1003184


Overview

Basic Information
Taxon OID3300004637 Open in IMG/M
Scaffold IDGa0066616_1003184 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_150m_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1468
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083344Metagenome / Metatranscriptome113N
F098166Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0066616_10031841F083344N/AMITTIKFTSDDLTMLRGVMACTAKKSVRRPALNGFHINKDHVVGTDGSRIAKFNTPHFDGELPERGVIIPSIKIPFSVHTVIITIDDNKITVDKYSKQGKTTEVYQIIDANYPLYRNVLADADRGKTAVDKIAFNPMLISEVAKATKTNIIQIEFTFGGELSLIYVNIPELPEFTFGIMPARY*
Ga0066616_10031843F098166AGGAGMNILVSKDEEQSIYTTAMRFTMADGDMLLTATTAEIDRLGEWLGKNGLTGVYTDIEEDDFIECNDFMFTNGDIDINSDNHLTFIRLLK*
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