NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066615_1227596

Scaffold Ga0066615_1227596


Overview

Basic Information
Taxon OID3300004640 Open in IMG/M
Scaffold IDGa0066615_1227596 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_135m_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)572
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029556Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0066615_12275962F029556GAGMSMIKFDDSKIKEIRGRKLKGLPPIPSTEDIVIASKDAKGGSELIYERVKERVPDDLWNYFQIILSRVRDYEDKPKILWFQDTSNDPEVQFLKDKSQRDKFDRFVFPSDWSLEKYHLDLGIEYEKSVV

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