NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066612_1316467

Scaffold Ga0066612_1316467


Overview

Basic Information
Taxon OID3300004642 Open in IMG/M
Scaffold IDGa0066612_1316467 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_10m_RNA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051049Metagenome / Metatranscriptome144Y
F057295Metagenome / Metatranscriptome136Y
F059880Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0066612_13164671F051049N/AQSLNNLEVNYIKHMEKYNGYRDAGYVWWERIKDCQKWCTKERTYVPMSDTQTLMIMRKWVKKQKSFDIV*
Ga0066612_13164675F059880GAGGMKKLHFENTDEFERVFKAKDEEVTDAMVEGIQEAFSFQKKSAELFEITFKDIDLVYDITLPSTQWEVALETCLNHYRDLEQSDKAIDVYLLQKGIRLWLS*
Ga0066612_13164676F057295GGAMVKLIFLDNEYYQLVRQIKVEQVNGNMEGLKAWRDRLHCNHVLKYQGNYLMVRTIEDAEIIK*
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