Scaffold Ga0065177

Basic Information
Taxon OID	3300004685 Open in IMG/M
Scaffold ID	Ga0065177_1000174 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004685 Open in IMG/M

Scaffold ID

Ga0065177_1000174 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10423
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10423

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F012670	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065177_100017413	F012670	GAGG	VFDQPIRPEGSQVSKEEAKEKARAAYRAKKAEKKALAIASGERQPRGGFAEGVVTNPKGRPKSIVNRVTEYGALFNKLNEERVSKGLAPLKTAMEVLIDAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNVSREEETDADEALDDFIESLRKV*
Ga0065177_100017414	F001915	GAGG	MEWTLAHPLHDVEDIVSLADMNYGSEIDGILKRDRNVFRHRVTVATTEQIFNKSREFIAVCRDDPIVIPQYDMNQQVVGSYTERPLLGFCWFDRGGYTTYSNEEISNAKFHHIDLSLSPRTRVRLVNEMIDQHILWAHTYGIPIICSTSIRAEHNGFMKIHQKRGFTVNGSYAWIRTEEAMKCLINQ*
Ga0065177_10001742	F000857	GGAG	MGLNANNEEALVNEDYYTKGILEAGVDAVLRKNNKLFNEVKSGTWSQNFNTGNLKYKVGAIDGERYVQYEQMNVEAVREKCKQMREFYKEHGTDNPFFAGTFHAMDLPKCFVHEITSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPSIPTR*
Ga0065177_10001745	F003521	AGGA	MQSLVSNIRGFFNKRTRAIDSQKGASVERKTLAIENGEAASRLMKNNDFALMFNLYRFNMLDRLEESTTDLERISNAHFVAGVRDFIDYIEKMELLGKVALKRSDTQDEKE*
Ga0065177_10001749	F001059	AGGA	MATYDIEALKADLPTAKELSQFVYDKTGIALDLVGKPKEDQYLAAKNALEGKKVPSEFLTDENPYVEKKDLVPEDPMPSVPPREAGLLDPEAMVHHFGATNMPHPLDPQSDRKVHITFRKYEDGSLTFEVVGPLEKQAVGSRLNKYGQVQPEKYTWLDPRTGERLMRKADGSFTKEGRGMYAYCVGEKGGGIWPLIDKEAVRISEKNIANPWA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065177_1000174

Overview

Ecosystem & Geography

Associated Families

Sequences