Basic Information | |
---|---|
Taxon OID | 3300004686 Open in IMG/M |
Scaffold ID | Ga0065173_1000270 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9256 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (81.82%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001059 | Metagenome / Metatranscriptome | 790 | Y |
F001915 | Metagenome / Metatranscriptome | 617 | Y |
F006264 | Metagenome / Metatranscriptome | 377 | Y |
F009598 | Metagenome / Metatranscriptome | 315 | Y |
F012670 | Metagenome / Metatranscriptome | 278 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0065173_10002701 | F009598 | GAGG | MLDKQNVVVQNLASGEGKRSVVEKIAHEVYLKMVDYLRLTQAKNTLNRFNDYHYLTIPVSESTEPIRGIDYIHPVVAPGIDYATAIITKCLMPDGKVNFEFGKTHDYDEGARQSTEMVMRMLNNKNDSYALVRDWAQDGLLHKNGIVMVMPVREPLVQYKEVEGTKDQLRSFEIMAAEKGLTPKRQQMRRIDVNLQGVAQEMMQPDEPE |
Ga0065173_10002703 | F006264 | N/A | MEDFSAKFQQKLSGQAEVCARKTLEWLQKDLQGERNLTPAEVYYLSKAADVLLTIRDDYGKK* |
Ga0065173_10002704 | F001059 | AGGA | MATYDIDALKADLPTAKELAQFVYDKTGLSLELVGKPKEDQYQVAKNALEGKKVPSEFLTDENPYVEKKDVVPEDPMPQVPAREAGLPDPEAMVHHFGATNMPHPLDPQSDRKVHITFRKYEDGSLTFEVMGPLEKQAVGSRLNKYGQVQPEKYTWLDPRTGEKLMRKADGTFTKEGRGMYAYCVGEKGGGIWNLIDKEAVRISEKNIANPWA* |
Ga0065173_10002708 | F012670 | GAGG | VFDKPIRPEGSDVSKEEAKERSRAAYRAKKAEKKALAIASGERLPRGGFAEGVVTNPKGRPKSIVNRVTEYGALFNQLNEQRTSAGLPPLKTAMETLIEALQSDELDIKDRARIAEKIAAYESSRAPVISIEHVNNVVSGEDNVDTEDAMNEFINSLRKV* |
Ga0065173_10002709 | F001915 | AGGA | MEWTLAHPLHDVEDIVNLADVNYGSEIDGILKRDRNVFRHRVTVATTEQIFNKSREFIAVCRGVNFVAVKDSKGKVLGHEPADDKLLGFCWFDRGGYTTYSNEEISNAKFHHVDLSLSARTRVLLINQMIDQHVLWANNYGIPIICSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEEAMKCLTNQ* |
⦗Top⦘ |