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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004686 Open in IMG/M |
| Scaffold ID | Ga0065173_1000490 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7245 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F005087 | Metagenome / Metatranscriptome | 412 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0065173_10004901 | F003521 | N/A | MQSLVSNIRGFFNKRTRAIDSQKGASVERKTLAIENGEAASRLMKNNDFALMFNLYRFNMLDRLEESTSDLERISNAHYVAGVRDFIDYIEKMELLGKMALKRSDTQDEKE* |
| Ga0065173_10004904 | F000857 | GGAG | MGLNANNEEAEVREDYYTKGNMAAGVEGVLRKNDKLYNEVKSGTWSQTFDTGNLKYKIGAIDGERYVQYEQMNVEKVREKCRQMRDFYKEHGTDNPFFAGTFHAMDLPKCFAHEISSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPSIPTR* |
| Ga0065173_10004905 | F005087 | GAGG | MSLFIQSANALVNRVAQWVGAIPQPTGITVSSYNATTQVLTVGSDPTSIIFPGDYIAPRLNNGMTIVLSVTSSTITVVDPDGYWTGVSTGTNILALPTAQTSEIYGCIQACELRMRTLELPSLRTNPYDPSTPTVLTTDQNGMAPIPADMNWPILFFQETPNPNVQPGTPAATMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGPNYVFTPNPGANVAIKAYYQRTFPFLFSPTSDSLNPLVMNNAVLASFPEGYLYGTLWAYYDKNKNTEEAQKWDARLEDSYGNIEDQNFKDKWRGGDTHLTSEFQPRTYRYNFK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |