NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065176_1001685

Scaffold Ga0065176_1001685


Overview

Basic Information
Taxon OID3300004691 Open in IMG/M
Scaffold IDGa0065176_1001685 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1884
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003007Metagenome / Metatranscriptome513Y
F029022Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0065176_10016851F003007GAGMYKEGRQFVVDAKKEIDGVVKDVKGIQKDAKGIWAFFGNIFGFNKKIKPEIAQNVQKKPLNAGKKKKADFDENQIYAQVADALTKFFHAYNGLKAYAKEQEEIALTASGEEGQDIAIKLVIANLQMEKLNEEMREYMVYHVPEEMKDLYSRVNKMVGHIANQQALARKAELDKKKKIA
Ga0065176_10016852F029022GAGGMSLAEVESKIDSHIDICAVRYEGIEKEMRGVNARLKRLEGILIGGAGAIIGLLIHLITRG
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